Identifier Index

[ A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ ]

A

addh() (in Molecule)	Atom (in cinfony.jchem)	atomicnum (in Atom)
addh() (in Molecule)	Atom (in cinfony.pybel)	atoms (in Molecule)
addh() (in Molecule)	Atom (in cinfony.rdk)	atoms (in Molecule)
addh() (in Molecule)	atomicmass (in Atom)	atoms (in Molecule)
addh() (in Molecule)	atomicnum (in Atom)	atoms (in Molecule)
aggdraw (in cinfony.rdk)	atomicnum (in Atom)	atoms (in Molecule)
Atom (in cinfony.cdk)	atomicnum (in Atom)
Atom (in cinfony.indy)	atomicnum (in Atom)

B

bits (in Fingerprint)	bits (in Fingerprint)
bits (in Fingerprint)	bits() (in Fingerprint)

C

calcdesc() (in Molecule)	cdk (in cinfony.cdk)	close() (in Outputfile)
calcdesc() (in Molecule)	charge (in Molecule)	close() (in Outputfile)
calcdesc() (in Molecule)	chemaxon (in cinfony.jchem)	close() (in Outputfile)
calcdesc() (in Molecule)	cidx (in Atom)	close() (in Outputfile)
calcdesc() (in Molecule)	cinfony	cls (in cinfony.jchem)
calcdesc() (in Molecule)	classpath (in cinfony.jchem)	conformers (in Molecule)
calcfp() (in Molecule)	clear() (in MoleculeData)	coordidx (in Atom)
calcfp() (in Molecule)	clear() (in MoleculeData)	coords (in Atom)
calcfp() (in Molecule)	clear() (in MoleculeData)	coords (in Atom)
calcfp() (in Molecule)	clear() (in MoleculeData)	coords (in Atom)
calcfp() (in Molecule)	clear() (in MoleculeData)	coords (in Atom)
calcfp() (in Molecule)	close() (in Outputfile)	coords (in Atom)
calcfp() (in Molecule)	close() (in Outputfile)
cdk (in cinfony)	close() (in Outputfile)

D

data (in Molecule)	descs (in cinfony.jchem)	draw() (in Molecule)
data (in Molecule)	descs (in cinfony.pybel)	draw() (in Molecule)
data (in Molecule)	descs (in cinfony.rdk)	draw() (in Molecule)
data (in Molecule)	dim (in Molecule)	draw() (in Molecule)
data (in Molecule)	draw() (in Molecule)	draw() (in Molecule)
descs (in cinfony.cdk)	draw() (in Molecule)

E

ECFPConfiguration (in cinfony.jchem)	exactmass (in Molecule)	exactmass (in Atom)
energy (in Molecule)	exactmass (in Molecule)	exactmass (in Molecule)

F

findall() (in Smarts)	forcefields (in cinfony.cdk)	formula (in Molecule)
findall() (in Smarts)	forcefields (in cinfony.jchem)	formula (in Molecule)
findall() (in Smarts)	forcefields (in cinfony.pybel)	formula (in Molecule)
findall() (in Smarts)	forcefields (in cinfony.rdk)	formula() (in Molecule)
findall() (in Smarts)	formalcharge (in Atom)	fps (in cinfony.cdk)
Fingerprint (in cinfony.cdk)	formalcharge (in Atom)	fps (in cinfony.indy)
Fingerprint (in cinfony.indy)	formalcharge (in Atom)	fps (in cinfony.jchem)
Fingerprint (in cinfony.jchem)	formalcharge (in Atom)	fps (in cinfony.pybel)
Fingerprint (in cinfony.pybel)	formalcharge (in Atom)	fps (in cinfony.rdk)
Fingerprint (in cinfony.rdk)	formula (in Molecule)	fps (in cinfony.silverwebel)
Fingerprint (in cinfony.silverwebel)	formula (in Molecule)	fps (in cinfony.webel)
Fingerprint (in cinfony.webel)	formula (in Molecule)

G

getdescs() (in cinfony.silverwebel)	getdescs() (in cinfony.webel)

H

has_key() (in MoleculeData)	has_key() (in MoleculeData)	heterovalence (in Atom)
has_key() (in MoleculeData)	has_key() (in MoleculeData)	hyb (in Atom)
has_key() (in MoleculeData)	heavyvalence (in Atom)

I

idx (in Atom)	informats (in cinfony.opsin)	items() (in MoleculeData)
implicitvalence (in Atom)	informats (in cinfony.pybel)	items() (in MoleculeData)
indigo (in cinfony.indy)	informats (in cinfony.rdk)	items() (in MoleculeData)
indigoInchi (in cinfony.indy)	informats (in cinfony.silverwebel)	iteritems() (in MoleculeData)
indy (in cinfony)	informats (in cinfony.webel)	iteritems() (in MoleculeData)
informats (in cinfony.cdk)	isotope (in Atom)	iteritems() (in MoleculeData)
informats (in cinfony.indy)	items() (in MoleculeData)	iteritems() (in MoleculeData)
informats (in cinfony.jchem)	items() (in MoleculeData)	iteritems() (in MoleculeData)

J

jchem (in cinfony)

K

keys() (in MoleculeData)	keys() (in MoleculeData)	keys() (in MoleculeData)
keys() (in MoleculeData)	keys() (in MoleculeData)

L

localopt() (in Molecule)	localopt() (in Molecule)

M

make3D() (in Molecule)	Molecule (in cinfony.pybel)	molwt (in Molecule)
make3D() (in Molecule)	Molecule (in cinfony.rdk)	molwt (in Molecule)
make3D() (in Molecule)	Molecule (in cinfony.silverwebel)	molwt (in Molecule)
match() (in Smarts)	Molecule (in cinfony.webel)	molwt (in Molecule)
match() (in Smarts)	MoleculeData (in cinfony.cdk)	molwt (in Molecule)
Molecule (in cinfony.cdk)	MoleculeData (in cinfony.indy)	molwt (in Molecule)
Molecule (in cinfony.indy)	MoleculeData (in cinfony.jchem)	molwt() (in Molecule)
Molecule (in cinfony.jchem)	MoleculeData (in cinfony.pybel)
Molecule (in cinfony.opsin)	MoleculeData (in cinfony.rdk)

N

nci (in cinfony.silverwebel)	nci() (in cinfony.webel)

O

operations (in cinfony.pybel)	outformats (in cinfony.opsin)	Outputfile (in cinfony.indy)
opsin (in cinfony)	outformats (in cinfony.pybel)	Outputfile (in cinfony.jchem)
opsin (in cinfony.opsin)	outformats (in cinfony.rdk)	Outputfile (in cinfony.pybel)
outformats (in cinfony.cdk)	outformats (in cinfony.silverwebel)	Outputfile (in cinfony.rdk)
outformats (in cinfony.indy)	outformats (in cinfony.webel)	Outputfile (in cinfony.silverwebel)
outformats (in cinfony.jchem)	Outputfile (in cinfony.cdk)	Outputfile (in cinfony.webel)

P

partialcharge (in Atom)	pybel (in cinfony)

R

rajweb (in cinfony.silverwebel)	readfile() (in cinfony.rdk)	readstring() (in cinfony.silverwebel)
rajweb() (in cinfony.webel)	readstring() (in cinfony.cdk)	readstring() (in cinfony.webel)
rdk (in cinfony)	readstring() (in cinfony.indy)	removeh() (in Molecule)
readfile() (in cinfony.cdk)	readstring() (in cinfony.jchem)	removeh() (in Molecule)
readfile() (in cinfony.indy)	readstring() (in cinfony.opsin)	removeh() (in Molecule)
readfile() (in cinfony.jchem)	readstring() (in cinfony.pybel)	removeh() (in Molecule)
readfile() (in cinfony.pybel)	readstring() (in cinfony.rdk)	removeh() (in Molecule)

S

silverwebel (in cinfony)	Smarts (in cinfony.pybel)	spin (in Atom)
Smarts (in cinfony.cdk)	Smarts (in cinfony.rdk)	spin (in Molecule)
Smarts (in cinfony.indy)	Smarts (in cinfony.silverwebel)	sssr (in Molecule)
Smarts (in cinfony.jchem)	Smarts (in cinfony.webel)

T

title (in Molecule)	title (in Molecule)	type (in Atom)
title (in Molecule)	title (in Molecule)
title (in Molecule)	tk (in cinfony.silverwebel)

U

unitcell (in Molecule)	update() (in MoleculeData)	update() (in MoleculeData)
update() (in MoleculeData)	update() (in MoleculeData)	update() (in MoleculeData)

V

valence (in Atom)	values() (in MoleculeData)	vector (in Atom)
values() (in MoleculeData)	values() (in MoleculeData)
values() (in MoleculeData)	values() (in MoleculeData)

W

webel (in cinfony)	write() (in Outputfile)	write() (in Molecule)
write() (in Molecule)	write() (in Molecule)	write() (in Outputfile)
write() (in Outputfile)	write() (in Molecule)	write() (in Molecule)
write() (in Molecule)	write() (in Outputfile)	write() (in Outputfile)
write() (in Outputfile)	write() (in Molecule)
write() (in Molecule)	write() (in Outputfile)

_

__contains__() (in MoleculeData)	__iter__() (in Molecule)	_builder (in cinfony.pybel)
__contains__() (in MoleculeData)	__iter__() (in MoleculeData)	_cinfony (in Molecule)
__contains__() (in MoleculeData)	__iter__() (in Molecule)	_cinfony (in Molecule)
__contains__() (in MoleculeData)	__iter__() (in MoleculeData)	_cinfony (in Molecule)
__contains__() (in MoleculeData)	__iter__() (in Molecule)	_cinfony (in Molecule)
__delitem__() (in MoleculeData)	__iter__() (in MoleculeData)	_cinfony (in Molecule)
__delitem__() (in MoleculeData)	__iter__() (in Molecule)	_cinfony (in Molecule)
__delitem__() (in MoleculeData)	__iter__() (in MoleculeData)	_cinfony (in Molecule)
__delitem__() (in MoleculeData)	__len__() (in MoleculeData)	_cinfony (in Molecule)
__delitem__() (in MoleculeData)	__len__() (in MoleculeData)	_cp (in cinfony.cdk)
__getattr__() (in Fingerprint)	__len__() (in MoleculeData)	_cp (in cinfony.jchem)
__getattr__() (in Fingerprint)	__len__() (in MoleculeData)	_cp (in cinfony.opsin)
__getattr__() (in Fingerprint)	__len__() (in MoleculeData)	_descdict (in cinfony.cdk)
__getitem__() (in MoleculeData)	__or__() (in Fingerprint)	_descdict (in cinfony.pybel)
__getitem__() (in MoleculeData)	__or__() (in Fingerprint)	_descDict (in cinfony.rdk)
__getitem__() (in MoleculeData)	__or__() (in Fingerprint)	_descs (in cinfony.silverwebel)
__getitem__() (in MoleculeData)	__or__() (in Fingerprint)	_descs (in cinfony.webel)
__getitem__() (in MoleculeData)	__or__() (in Fingerprint)	_descset (in cinfony.jchem)
__init__() (in Atom)	__or__() (in Fingerprint)	_fingerprinters (in cinfony.cdk)
__init__() (in Fingerprint)	__or__() (in Fingerprint)	_fingerprinters (in cinfony.pybel)
__init__() (in Molecule)	__package__ (in cinfony)	_forcefields (in cinfony.pybel)
__init__() (in MoleculeData)	__package__ (in cinfony.cdk)	_forcefields (in cinfony.rdk)
__init__() (in Outputfile)	__package__ (in cinfony.indy)	_formats (in cinfony.cdk)
__init__() (in Smarts)	__package__ (in cinfony.jchem)	_formats (in cinfony.indy)
__init__() (in Atom)	__package__ (in cinfony.opsin)	_formats (in cinfony.rdk)
__init__() (in Fingerprint)	__package__ (in cinfony.pybel)	_gettitle() (in Molecule)
__init__() (in Molecule)	__package__ (in cinfony.rdk)	_gettitle() (in Molecule)
__init__() (in MoleculeData)	__package__ (in cinfony.webel)	_gettitle() (in Molecule)
__init__() (in Outputfile)	__repr__() (in MoleculeData)	_gettitle() (in Molecule)
__init__() (in Smarts)	__repr__() (in MoleculeData)	_gettitle() (in Molecule)
__init__() (in Atom)	__repr__() (in MoleculeData)	_indigonet (in cinfony.indy)
__init__() (in Fingerprint)	__repr__() (in MoleculeData)	_informats (in cinfony.cdk)
__init__() (in Molecule)	__repr__() (in MoleculeData)	_isofact (in cinfony.cdk)
__init__() (in MoleculeData)	__setitem__() (in MoleculeData)	_jvm (in cinfony.cdk)
__init__() (in Outputfile)	__setitem__() (in MoleculeData)	_jvm (in cinfony.jchem)
__init__() (in Smarts)	__setitem__() (in MoleculeData)	_jvm (in cinfony.opsin)
__init__() (in Molecule)	__setitem__() (in MoleculeData)	_nametostruct (in cinfony.opsin)
__init__() (in Atom)	__setitem__() (in MoleculeData)	_notinformats (in cinfony.rdk)
__init__() (in Fingerprint)	__str__() (in Atom)	_notoutformats (in cinfony.rdk)
__init__() (in Molecule)	__str__() (in Fingerprint)	_obconv (in cinfony.pybel)
__init__() (in MoleculeData)	__str__() (in Molecule)	_obdotnet (in cinfony.pybel)
__init__() (in Outputfile)	__str__() (in Atom)	_operations (in cinfony.pybel)
__init__() (in Smarts)	__str__() (in Fingerprint)	_outformats (in cinfony.cdk)
__init__() (in Atom)	__str__() (in Molecule)	_restoinchi (in cinfony.opsin)
__init__() (in Fingerprint)	__str__() (in Atom)	_revbondtypes (in cinfony.cdk)
__init__() (in Molecule)	__str__() (in Fingerprint)	_settitle() (in Molecule)
__init__() (in MoleculeData)	__str__() (in Molecule)	_settitle() (in Molecule)
__init__() (in Outputfile)	__str__() (in Molecule)	_settitle() (in Molecule)
__init__() (in Smarts)	__str__() (in Atom)	_settitle() (in Molecule)
__init__() (in Fingerprint)	__str__() (in Fingerprint)	_settitle() (in Molecule)
__init__() (in Molecule)	__str__() (in Molecule)	_testmol (in cinfony.cdk)
__init__() (in Outputfile)	__str__() (in Atom)	_testmol (in cinfony.jchem)
__init__() (in Smarts)	__str__() (in Fingerprint)	_webclient (in cinfony.silverwebel)
__init__() (in Fingerprint)	__str__() (in Molecule)	_x (in cinfony.cdk)
__init__() (in Molecule)	__str__() (in Fingerprint)	_x (in cinfony.indy)
__init__() (in Outputfile)	__str__() (in Molecule)	_x (in cinfony.pybel)
__init__() (in Smarts)	__str__() (in Fingerprint)	_x (in cinfony.rdk)
__iter__() (in Molecule)	__str__() (in Molecule)	_y (in cinfony.cdk)
__iter__() (in MoleculeData)	_bondtypes (in cinfony.cdk)